PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000530.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 160aa    MW: 16893 Da    PI: 9.8006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000530.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1965116256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr+++ +g+++AeIrd       + +r++lg+f taeeAa a+++a+ +++g+
  Itr_sc000530.1_g00006.1  65 RYRGVRRRP-WGKYAAEIRD----SarQGARVWLGTFSTAEEAALAYDKAAFRMRGA 116
                              8********.**********....33334**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.74E-2964125No hitNo description
SuperFamilySSF541714.25E-2365124IPR016177DNA-binding domain
SMARTSM003801.5E-3565129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3165123IPR001471AP2/ERF domain
PfamPF008475.8E-1465115IPR001471AP2/ERF domain
PROSITE profilePS5103223.89465123IPR001471AP2/ERF domain
PRINTSPR003672.6E-116677IPR001471AP2/ERF domain
PRINTSPR003672.6E-1189105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAPNAPHHEA LPLNENDSQE MVLYEVLNEA RALPSSPAAA ATATHSGRSR GGGGAVMLRP  60
IEKKRYRGVR RRPWGKYAAE IRDSARQGAR VWLGTFSTAE EAALAYDKAA FRMRGAKALL  120
NFPPDVVVAA AAAAAAASSP AMRSYSCDTG MASSASCSNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3064126466ATERF1
3gcc_A1e-3064126466ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874196.12e-52PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
RefseqXP_015874202.12e-52PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046815e-52PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A0M4KMC01e-51A0A0M4KMC0_9R
STRINGSolyc02g077370.1.11e-49(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-25ethylene response factor 1